Bullying and harassment Research integrity

The Crooks of CRUK

Cancer Research UK is a charity which relies on donations, volunteer work and fundraising. What if these citizens knew their money goes to fund bad science?

If you are a British cancer researcher, chances are you will be applying to the charity Cancer Research UK (CRUK) for funding. Here a tip how you can succeed getting that money British people donate to cancer research: be open about having published some fraud, and you will receive a conspirational nod.

Don’t believe me? The University of Manchester-based immunologist Silvia Bulfone-Paus receives CRUK funding despite past massive misconduct findings and forced resignation as institute director in Germany, after 13 retractions (read more here). More recently, CRUK announced to have no inclination whatsoever to investigate the accusations of bullying and research misconduct in the Manchester CRUK institute of Richard Marais.

CRUK Chief Scientist Karen Vousden never replied to the cries for help posted as comments under my article, but as I demonstrate below, she has good reasons to be disinterested in this affair. Both Vousden and Marais are mentees of the late Chris Marshall, a legend of British cancer research. Marshall’s lab was at ICR London; this CRUK-funded cancer research centre has its own issues with research integrity and bullying, but what with ICR’s past and present leadership (Alan Ashworth and Paul Workman) being part of the problem, you can’t expect much.

Richard Marais: “Feel the power”

Regarding the Marais affair in Manchester (a deleted press release, overruled misconduct findings and cancelled retractions, all because the accused former Marais postdoc Romina Girotti lawyered-up), complaints like this were posted in the comment section on my site:

I had the misfortune to work with Richard Marais who has literally made my life hell. He was insecure in the extreme, to the point that anyone who managed to do their job well, who had friends in work or generally just got on with people, became the subject of his vitriol. […] I was denigrated and humiliated constantly, when eventually, I made a bullying/harassment case to HR. My story was swept under the carpet because he was the director of the Institute“.

Or this comment:

for so many years, we have been cordial to a man who used every chance to humiliate us in public and to block our careers. We are and we were ashamed to describe the details of what we witnessed and tried hard to forget. When so many former Marais alumni posted in this blog what Richard Marais has done to them, we had to confront our cowardice. As others, we felt that nobody would care about our pain and suffer, likely as an effect of the many times we were told, especially by Richard, that we were nobody.”

Here a comment from a clinician:

Richard Marais can push his lab members to suffer whatever is necessary to make his own way. Richard Marais can ask his postdocs to sit on his chair “to feel the power”. Richard Marais can call his postdocs “bodies” (on their back) because they are only occupying space in his lab and “not producing”. […] Richard Marais’ hate towards clinicians is ridiculous and he enjoys making their life miserable in his lab“.

Marais really does not sound like a nice person:

Marais has made a career out of bullying his trainees, establishing fear as a policy in his lab, making students and postdocs cry and humiliating them. He used to brag about it and nobody dared to stop him. Human resources staff were accomplices of it. He also bragged about his expensive life and frequent first class flights and felt good by asking British Airways staff “do you know who I am?”. Truly pathetic. He enjoyed having tearful students presenting 2h-straight presentations at lab retreats with their voice broken. As a ‘good bye’ from his lab people were given the last instruction: you cannot work in melanoma and your ideas belong to me.

How exactly is it good for science to usurp a research field as you own private fiefdom and to ban others from working on melanoma? How exactly is this beneficial for patients and their families, whose charity funds Marais’ research and his gigantic salary? Yet this suppression of science is apparently exactly what Marais is free to do:

He pushes junior PIs to not do research projects that might have competing interests with his lab. A former CRUK MI PI was asked to change his research focus to lung cancer and stop any melanoma work because it was competing with him.”

Bullying and research misconduct often go hand in hand. How else do you sanction lab members who refuse to produce the results you want to see as PI? Marais was described as “a total bully which let his postdocs to fight like gladiators to publish first (likely at the cost of quality)”.

In this regard, see this CRUK insider comment, about Marais and his CRUK Manchester colleague (and ex-wife) Caroline Springer:

“Caroline Springer selectively deletes data she does not like at lab meetings. Richard Marais approves this. Staff members can’t argue against her decisions. […] Filing a complaint puts our job in jeopardy. Caroline also runs her lab in a suspicious manner, hiding information for a part of her group and viceversa. She selects the experiments she wants to present in papers and meetings at Wellcome Trust and hides how many negatives there were. This has been ongoing for several years.”

One unrelated commenter said something similar:

I’ve sat at their joint Springer/Marais lab meetings thinking they are the worst scientists I’ve ever met. Not only they cherry pick the data they want, they force their staff to “decrease” the IC50 of a shitty LOX compounds orders of magnitude within a week time so they can reach their ‘milestones’ for Wellcome Trust. As if you could do magic. No research integrity at all.

This criticism by former lab member goes into a different direction:

Neither Richard Marais nor Caroline Springer have truly supported women in science. Quite the opposite, they have both banned them from working in similar research fields. It is ironic that Richard is an invited speaker of Women in Science Conferences“.

The Athena SWAN (Scientific Women’s Academic Network) award is just an undeserved trophy for Marais, as other CRUK Manchester commenter confirms and adds:

His post docs get yelled at routinely, they cry in the bathroom, they are afraid to speak of truth and live in fear of Richard’s fury.
The fact is, CRUK MI has lost too many good staff since Richard took the directorship. I have had conversations with the leavers where they confessed that they can not work for such a director anymore without self loathing. […] Occasionally, people were brave enough to make official complains regarding Richard’s bullying […], but HR (directly managed by Richard) never responded
.”

It gets worse:

I have witnessed terrible scenes: women crying because of their public humiliation in front of their lab mates, Richard Marais enjoying seeing them crying while thinking they are weak. Those were tears of frustration and impotence. […] While Lab meetings were bad, private meetings could be worse because there were no witnesses. […] Fear has fueled our silence. Fear to lose our jobs, to be excluded from conferences, to not publish again, to not get funding for our research. […]
Note: Take this description and multiply by 3, that is the accurate description of Caroline Springer
“.

There are more comments, in same vein: bullying, harassment, lab members reduced to tears, alumni banned from working on melanoma, unreliable preclinical and clinical research. CRUK informed me that they forwarded the issue to University of Manchester, obviously on assumption that the university will continue doing the same as they did before: nothing. Maybe this comment will with time grow into something which will make the crooks of CRUK stop and think:

I am writing as someone who has raised over £5,000 for Cancer Research UK in sponsored runs in the last 10 years. I lost my wife to breast cancer in 2014. Another fundraiser passed on the link to your blog to me. I am deeply upset about these accusations against the professors in Manchester. If any of them are true I feel very betrayed.”

Another CRUK fundraiser demanded their £10k back: “I’ll give it to somewhere deserving“.

Original CRUK shop photo: CRUK charity Bideford

Karen Vousden: lifelong learning of data integrity

As it is common with the rotten fishes, they stink from the head down. Marais is one example, but let’s move one floor higher, to the top executive offices. Meet the official Chief Scientist of CRUK, Karen Vousden, internationally influential p53-oncosuppressor protein researcher, formerly director of the CRUK Beatson Institute in Glasgow and now at The Crick in London, and her exciting PubPeer record.

The PubPeer evidence is rather old, but being a busy scientist and CRUK exec, Professor Vousden has yet to find time to address the concerns. Let us start with this vintage p53 paper from the Vousden lab.

M Ashcroft, MHG Kubbutat, KH Vousden Regulation of p53 function and stability by phosphorylation Molecular and Cellular Biology (1999) doi: 10.1128/mcb.19.3.1751 

The evidence is 3 years old

All three lane pairs are same, as background pattern makes evident. That assay and the entire paper should have been disposed as radioactive waste, yet it was never even corrected.

The first author Margaret Ashcroft is now professor in Cambridge. Many Vousden lab alumni moved on to become today’s science elites. In the greater scheme of things, what do some fabricated gels matter?

p53 induces cell cycle arrest via protein p21, and this of course was studied by the Vousden lab in detail. Another vintage classic:

S Bates, KM Ryan, AC Phillips, KH Vousden Cell cycle arrest and DNA endoreduplication following p21Waf1/Cip1 expression Oncogene (1998) doi: 10.1038/sj.onc.1202104 

Apparently, some flow cytometry files got accidentally duplicated. Yet the green/blue labelled ones are not identical. They seem to derive from the same FACS measurement file, but re-gated. Something unlikely to happen by a mistake of oversight, indeed such manipulations are much present in the papers of the unashamed data manipulator Giorgio Zauli.

The evidence is 3 years old, nothing has happened since. Worth noting that the first author and former Vousden mentee Stewart Bates became a senior executive scientist at GlaxoSmithKline. A similar thing happened in another Vousden paper, with Bates as coauthor:

AC Phillips, S Bates, KM Ryan, K Helin, KH Vousden Induction of DNA synthesis and apoptosis are separable functions of E2F-1 Genes & Development (1997) doi: 10.1101/gad.11.14.1853 

Also here same flow cytometry sample was apprently re-gated by software, and wham, one experimental sample became two utterly different ones. It is worth mentioning who another coauthor on that Vousden lab is: Kristian Helin, then at IEO in Milan, where he published a number of papers now discussed on PubPeer. You can read about Helin’s stellar and more recently less stellar career in cancer research here. You know, birds of a feather flock together.

In this vein, Vousden demonstrated her attitude to gel splicing and loading controls in this paper contributed with the US star cancer researcher Arnold Levine (who also doesn’t care much how his papers get made):

MH Kubbutat, RL Ludwig, AJ Levine, KH Vousden Analysis of the degradation function of Mdm2 Cell growth & differentiation: AACR (1999) Vol. 10, 87-92

The last lanes on the Mdm and p53 gels is spliced on. But there is no splicing on the loading control GFP. That last lane is very important, it namely shows that for that last sample (a certain deletion mutant Mdm protein), highlighted bands are much weaker or much stronger than with the wildtype or other mutants. But how do we know if that last sample is unadulterated, since it is spliced on and the loading control comes from a separate gel?

There are other examples of problematic gel splicing in Vousden papers, eg this Blagosklonny et al Carcinogenesis 2001. The practice was never actually accepted, after all this is exactly why good scientists load their samples on same gel, and check that same gel for equal loading: to be able to compare the signals properly. But some scientists already already “know” the result, you know.

Another star US collaborator one should have been careful with is Pier Paolo Pandolfi (here his PubPeer record).

R Bernardi, PP Scaglioni, S Bergmann, HF Horn, KH Vousden, PP Pandolfi PML regulates p53 stability by sequestering Mdm2 to the nucleolus Nature cell biology (2004) doi: 10.1038/ncb1147

An accident? Can one really confuse PML protein image with that of p53, and then crop it? In this case, Vousden is the p53 expert, the experiment might have been made in her Beatson lab.

Just when Vousden was moving from Glasgow to The Crick in London, she published this paper with her Beatson Institute colleagues:

P Lee, AK Hock, KH Vousden, EC Cheung p53- and p73-independent activation of TIGAR expression in vivo Cell Death and Disease (2015) doi: 10.1038/cddis.2015.205 

The last three bands of the TIGAR and CDK4 gels share many common features and artefacts to manifest the suspicion that they show the same signal. It is not clear if they are different film exposures of same western blot, or digitally processed duplications. In any case, it is not clear how that could have happened by chance or mistake.

Maybe Vousden is just unlucky with who she works with. In 1989, she published a paper in The Lancet, which was immediately retracted by her two coauthors John Tidy and Paul Farrell, for being irreproducible. However, Vousden’s name is not on the retraction notice, she just stayed out of it:

Now one could think: well, the sins of youth. The Vousden lab surely matured and does only the bestest and the most reliable of sciences now. Although it does seem Professor Vousden still has very little understanding of the concept of data integrity. This paper Labuschagne et al Cell Metabolism 2019 was published just 2 months ago:

Loading control is from a different gel, a very bad practice. And yet, nobody cared, in 2019.

A PubPeer commenter Plukenetia Lehmanniana jumped to Vousden’s defence:

Would it be nice to also see the Ponceau staining? Certainly. Is there any reason to believe that this is anything other than a well-done experiment? In my opinion, no.

My reply “no reason at all” with a hyperlink to Vousden’s PubPeer record did not pass moderation. It is namely unscientific and slanderous.

Now here is an idea: maybe certain CRUK top scientists would be more useful volunteering in CRUK charity shops?


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62 comments on “The Crooks of CRUK

  1. I think in principle I should apply for Cancer Research UK funding next year.
    Will let you know what happens.

    Like

  2. In that first pic of Caroline Springer, it looks like a drunken lab ladette may have barfed on her dress. My god. Hey big-pharma, do you really want to buy LOX inhibitors from this woman?

    Like

  3. https://www.eacr.org/mike-price-award/previous-winners

    2018 Mike Price Gold Medal Award winner: Karen Vousden

    In good company

    2014 Mike Price Gold Medal Award winner: José Baselga

    Top Sloan Kettering Cancer Doctor Resigns After Failing to Disclose Industry Ties

    Top Cancer Doctor, Forced Out Over Ties to Drug Makers, Joins Their Ranks

    Memorial Sloan Kettering Leaders Violated Conflict-of-Interest Rules, Report Finds

    Not one squeak about this from The European Association for Cancer Research

    Like

    • Failing to declare conflicts of interest suggested taking a look at the data.

      Cancer Cell. 2009 Apr 7;15(4):315-27. doi: 10.1016/j.ccr.2009.02.011.
      TGF-beta increases glioma-initiating cell self-renewal through the induction of LIF in human glioblastoma.
      https://www.cell.com/action/showPdf?pii=S1535-6108%2809%2900042-7
      Silvia Pen˜ uelas,1,4 Judit Anido,1,4 Rosa M. Prieto-Sanchez,1,4 Gerard Folch,1,4 Ignasi Barba,2 Isabel Cuartas,1,4
      David Garcı´a-Dorado,2 M. Antonia Poca,3 Juan Sahuquillo,3,5 Jose Baselga,1,4,5 and Joan Seoane1,4,5,6,
      * 1Medical Oncology Program
      2Cardiovascular Program
      3Neurosurgery Program
      Vall d’Hebron University Hospital Research Institute, 08035 Barcelona, Spain
      4Vall d’Hebron Institute of Oncology, 08035 Barcelona, Spain
      5Autonomous University of Barcelona, 08035 Barcelona, Spain
      6Institucio´ Catalana de Recerca i Estudis Avanc¸ ats (ICREA), 08010 Barcelona, Spain.

      Problematic data:-
      Figure 3D.
      Much more similar than you would expect.

      Figure 2E.
      Much more similar than you would expect.

      Figure 2D.
      Much more similar than you would expect.

      Like

      • Cancer Res. 2008 Nov 15;68(22):9221-30. doi: 10.1158/0008-5472.CAN-08-1740.
        Phosphatidylinositol 3-kinase hyperactivation results in lapatinib resistance that is reversed by the mTOR/phosphatidylinositol 3-kinase inhibitor NVP-BEZ235.
        https://cancerres.aacrjournals.org/content/68/22/9221.article-info
        AUTHOR INFORMATION
        Pieter J.A. Eichhorn1, Magüi Gili1, Maurizio Scaltriti1, Violeta Serra1, Marta Guzman1, Wouter Nijkamp2, Roderick L. Beijersbergen2, Vanesa Valero1, Joan Seoane1,3,4, René Bernards2, and José Baselga1,3
        1Medical Oncology Program, Vall d Hebron Institut de Oncologia, Barcelona, Spain; 2Division of Molecular Carcinogenesis and Center for Biomedical Genetics, The Netherlands Cancer Institute, Amsterdam, the Netherlands; 3Autonomous University of Barcelona, Barcelona; and 4Instituciŏ Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain
        Requests for reprints:
        José Baselga, Vall d’Hebron University Hospital, P. Vall d’Hebron 119, Barcelona, 08035 Spain. Phone: 01134-932746085; Fax: 01134-932746059; E-mail: jbaselga@vhebron.net

        Figure 5A. Much more similar than you would expect..

        Like

      • Clin Cancer Res. 2007 Jan 1;13(1):81-9.
        4E-binding protein 1, a cell signaling hallmark in breast cancer that correlates with pathologic grade and prognosis.
        https://clincancerres.aacrjournals.org/content/13/1/81.article-info
        Federico Rojo1, Laura Najera1, José Lirola1, José Jiménez1, Marta Guzmán3, M. Dolors Sabadell2, Jose Baselga3 and Santiago Ramon y Cajal1
        Authors’ Affiliations: Departments of 1Pathology, 2Gynecology, and 3Oncology, Vall d’Hebron University Hospital, Barcelona, Spain
        Requests for reprints:
        Santiago Ramon y Cajal, Department of Pathology, Vall d’Hebron University Hospital, Passeig Vall d’Hebron, 119-129 08035 Barcelona, Spain.

        Figure 1. Much more similar than you would expect.

        Are Jose Baselga’s publications a horrible fantasy, or just run of the mill for high ups in “Cancer Research”?

        Like

  4. Oncogene. 2004 Apr 29;23(20):3721-5.
    p73-alpha is capable of inducing scotin and ER stress.
    Terrinoni A1, Ranalli M, Cadot B, Leta A, Bagetta G, Vousden KH, Melino G.
    Author information
    1
    Biochemistry Laboratory, IDI-IRCCS, Department of Experimental Medicine and Biochemical Sciences, University of Rome ‘Tor Vergata’, 00133 Rome, Italy.

    Figure 1.

    Like

  5. “what with ICR’s past and present leadership (Alan Ashworth and Paul Workman) being part of the problem, you can’t expect much.”

    You hyper link to Paul Workman refers to one about the present CEO and President of ICR
    https://www.icr.ac.uk/our-research/researchers-and-teams/professor-paul-workman
    “Professor Paul Workman FMedSci, FRS is Chief Executive and President of The Institute of Cancer Research (ICR).”

    There is another article: https://forbetterscience.com/2018/09/06/fake-data-untouchable-men-and-guilty-women-at-icr-london/

    According to the Retraction Watch database:
    http://retractiondatabase.org/RetractionSearch.aspx#?auth%3dWorkman%252c%2bPaul

    Paul Workman has a 2019 retraction for “Falsification/Fabrication of Image” and a
    2019 correction in Molecular Cancer Therapeutics for “Concerns/Issues About Image”.

    https://mct.aacrjournals.org/site/misc/edboard.xhtml
    Deputy Editors
    Yubin Kang

    Akash Patnaik

    Puja Sapra

    Paul Workman

    Surely that is a Conflict of Interest?

    Such conflicts of interest have recently been documented at Retraction Watch:-
    inside a journal.
    https://retractionwatch.com/2019/10/31/plos-one-realizes-an-academic-editor-had-a-conflict-of-interest-that-the-publisher-says-it-now-tries-harder-to-avoid/
    inside an institute.
    https://retractionwatch.com/2019/10/29/no-possible-fraudulent-explanation-frequent-co-author-tasked-with-clearing-colleagues-of-image-manipulation/

    Paul Workman takes the biscuit as he was in charge of investigating himself in his own institue.

    Your link to Alan Ashworth gives his UCSF webpage.
    https://cancer.ucsf.edu/people/profiles/ashworth_alan
    “Prior to joining UCSF in January 2015, he served as Chief Executive of the Institute of Cancer Research (ICR) and the Director of the Breakthrough Breast Cancer Research Centre in London, United Kingdom.”

    Problematic data Alan Ashworth.
    Some may be simple mistakes, others are more involved.

    https://pubpeer.com/publications/22A0D80CF891EEFEB7C23332484780
    https://pubpeer.com/publications/CECD3E767BD0AFA9DDB1BA919F663F
    https://pubpeer.com/publications/261D475F6640FC59C9A867EC7F5DD2
    https://pubpeer.com/publications/40975CCD671ACC13843AC53551942C
    https://pubpeer.com/publications/67F39E13B7C8B51E8F8F34D70AFF84
    https://pubpeer.com/publications/509134CE1EE1E6A1C7DEA161CB77CB
    https://pubpeer.com/publications/C2570E46E89E6746B01CF962D728A8

    Like

  6. Rotten from the top

    Has anyone seen D1ck Marais these days. I heard through the grapevine that he takes much needed mental health time away from work breaks. Translation:- taking business class flights to the Caribbean, where for a while, just for a while, he can brainwash himself that there isn’t a sh1t storm happening at CRUK MI. You see Richard, yes we know you read this blog, when Romina lawyered up, unbeknownst to her I imagine, she set a precedent. I look forward to the day where we will watch the tears roll down your face. This time it won’t be an Oscar winning performance you made in the Summer (probably you greatest achievement). But rather one where you are in the dock at court and you are checkmate. Slimy bstrd. Stop waisting the money of every day people and resign along with all your cronies in cahoots.

    Like

  7. Checkmate Richard

    There is hope: a class action lawsuit against Richard Marais and possibly CRUK will be presented in court very soon. Marais hides terrible crimes at the ICR and CRUK Manchester, why nobody talks about it? CRUK authorities actively ignore our S.O.S messages … We want Richard Marais OUT and in jail!!

    Like

  8. CRUK careless with donors’ contributions?

    The money.
    https://kclpure.kcl.ac.uk/portal/en/persons/farzin-farzaneh(1e1e3bfb-d4bc-4223-bdc3-63f46dd77c05)/projects.html?ordering=upmProjectOrderByEndDate&descending=true

    KHP Centre Award – Non-Clinical Training Award
    CRUK – Cancer Research UK

    Parker, P., Ciccarelli, F., Dazzi, F., Farzaneh, F., Hayday, A., Maher, J. et al.

    £3,771,843.89

    1/04/2017 → 30/03/2023

    Research Grant Studentship

    The scientific quality.
    https://retractionwatch.com/2019/11/04/exclusive-kings-college-london-finds-poor-research-practices-but-no-misconduct-in-two-recent-cases/#more-118381

    “The Panel has requested that Professors Farzaneh and Mufti provide notices of correction, publish errata, and/or provide amended figures to the following scientific journals: Molecular Therapy, Blood, Haematologica, Molecular and Cellular Biology, and Molecular Cancer Research.”

    Farzin Farzaneh penultimate author.

    Data in Toxicol Lett. 2009 Dec 15;191(2-3):118-22 looks very like data in J Leukoc Biol. 2005 Aug;78(2):503-14, yet experiments different.

    Toxicol Lett. 2009 Dec 15;191(2-3):118-22. doi: 10.1016/j.toxlet.2009.08.012. Epub 2009 Aug 19.
    RACK-1 overexpression protects against goniothalamin-induced cell death.
    Inayat-Hussain SH1, Wong LT, Chan KM, Rajab NF, Din LB, Harun R, Kizilors A, Saxena N, Mourtada-Maarabouni M, Farzaneh F, Williams GT.
    Author information
    1
    Toxicology and Biocompatibility Laboratory, Faculty of Allied Health Sciences, Universiti Kebangsaan Malaysia.

    J Leukoc Biol. 2005 Aug;78(2):503-14. Epub 2005 May 3.
    Functional expression cloning reveals a central role for the receptor for activated protein kinase C 1 (RACK1) in T cell apoptosis.
    Mourtada-Maarabouni M1, Kirkham L, Farzaneh F, Williams GT.
    Author information
    1
    School of Life Sciences, Keele University, Keele, ST5 5BG, UK.

    J Biol Chem. 2001 Apr 13;276(15):12068-75. Epub 2001 Jan 11.
    Selective cleavage of BLM, the bloom syndrome protein, during apoptotic cell death.
    http://www.jbc.org/content/276/15/12068.long
    Oliver Bischof‡§,¶‖, Sanjeev Galande‡§, Farzin Farzaneh¶, Terumi Kohwi-Shigematsu‡ and Judith Campisi‡**
    -Author Affiliations

    From the ‡Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley California 94720 and the ¶Department of Molecular Medicine, The Rayne Institute, Guy’s, Kuig’s and St. Thomas’ School of Medicine, King’s College, London SE5 9NU, United Kingdom

    Figure 5E. Much more similar after horizontal flip than you would expect.

    Like

  9. “The first author Margaret Ashcroft is now professor in Cambridge. Many Vousden lab alumni moved on to become today’s science elites. In the greater scheme of things, what do some fabricated gels matter?”

    Cancer Res. 2008 Jan 15;68(2):545-52. doi: 10.1158/0008-5472.CAN-06-4738.
    Regulation of angiogenic factors by HDM2 in renal cell carcinoma.
    https://cancerres.aacrjournals.org/content/68/2/545.article-info

    AUTHOR INFORMATION
    Veronica A. Carroll, and Margaret Ashcroft
    Cell Growth Regulation and Angiogenesis Laboratory, Cancer Research UK Centre for Cancer Therapeutics, Surrey, United Kingdom
    Requests for reprints:
    Margaret Ashcroft, Cell Growth Regulation and Angiogenesis Laboratory, Cancer Research UK Centre for Cancer Therapeutics, The Institute of Cancer Research, Sutton, Surrey SM2 5NG United Kingdom.

    Figures 3A and 5A. Much more similar than you would expect.

    http://www.med.cam.ac.uk/ashcroft/publications/
    page 2
    Role of hypoxia-inducible factor (HIF)-1alpha versus HIF-2alpha in the regulation of HIF target genes in response to hypoxi, insulin-like growth factor-I, or loss of von Hippel-Lindau function: implications for targeting the HIF pathway. Carroll V.A., Ashcroft M. Cancer Res (2006) 66(12):6264-70.

    Like

    • Cancer Res. 2008 Jan 15;68(2):545-52.

      Figures 3A, 3B and 5A. much more similar than you would expect.

      Like

      • Cancer Res. 2005 Jun 1;65(11):4918-28.
        Identification of novel small molecule inhibitors of hypoxia-inducible factor-1 that differentially block hypoxia-inducible factor-1 activity and hypoxia-inducible factor-1alpha induction in response to hypoxic stress and growth factors.
        Chau NM1, Rogers P, Aherne W, Carroll V, Collins I, McDonald E, Workman P, Ashcroft M.
        Author information
        1
        Cell Growth Regulation and Angiogenesis Team, Cancer Research UK Centre for Cancer Therapeutics, Institute of Cancer Research, Sutton, Surrey, United Kingdom.

        Figure 6A. Unexplained straight edges.

        Like

  10. Correction. Apologies, but it gets so confusing!

    Cancer Res. 2008 Jan 15;68(2):545-52.

    Figures 1B, 3A, and 5A. much more similar than you would expect.

    Like

    • Cancer Res. 2008 Jan 15;68(2):545-52.

      Figure 5A. Light areas between lanes in 2 panels (obscured by colored rectangles in previous illustrations).

      Figures 1A and 1B seem to be redundant.

      Like

  11. M Ashcroft, MHG Kubbutat, KH Vousden Regulation of p53 function and stability by phosphorylation Molecular and Cellular Biology (1999) doi: 10.1128/mcb.19.3.1751

    https://pubpeer.com/publications/B518680DD43B568C9DA7F41F9BBE54

    Margaret Ashcroft writes:

    ” Clearly, we need to resolve this as soon as possible before any further action is taken.”

    Why isn’t Margaret Ashcroft deeply concerned about the data rather than seeing the problematic being pointed out?

    Why shouldn’t action be taken?

    Why is Margaret Ashcroft trying to influence the outcome of any inquiry?

    ———- Forwarded message ———
    From: Margaret Ashcroft m.ashcroft@medschl.cam.ac.uk
    Date: Tue, Oct 22, 2019 at 6:20 AM
    Subject: Re: Highly problematic NIH-funded data Mol Cell Biol. 1999 Mar;19(3):1751-8. Precedence for retracting old paper from Mol Cell Biol.
    To: claire Francis claire.francis1492@gmail.com, Francis.Collins@nih.hhs.gov Francis.Collins@nih.hhs.gov, karen.vousden@crick.ac.uk karen.vousden@crick.ac.uk, michael.way@crick.ac.uk michael.way@crick.ac.uk
    Cc: Linda Gough cope_administrator@publicationethics.org, Roger Davis roger.davis@umassmed.edu, ptontonoz@mednet.ucla.edu ptontonoz@mednet.ucla.edu, Fiona Watt – UKRI MRC fiona.watt@mrc.ukri.org, Frances Rawle – UKRI MRC Frances.Rawle@headoffice.mrc.ac.uk, Fiona Godlee fgodlee@bmj.com

    Dear All,

    I am deeply concerned to see this email, and the issue raised with the data highlighted data in our 1999 paper.

    We take data integrity very seriously.

    Original autorad data were catalogued in files along with auditable lab books and held at the NCI. I left the NCI in 2000.

    Around that time, raw data/autorads were photographed and made up by the publications Department at NCI as print on paper figures.

    I have been in contact with Karen (Vousden) to source the original data in order to address this issue.

    Clearly, we need to resolve this as soon as possible before any further action is taken.

    Best wishes, Margaret

    Professor Margaret Ashcroft PhD, FRSB, MRCR (Hon)
    University of Cambridge, UK
    Tel: +44 (0) 1223 762024
    Email: m.ashcroft@medschl.cam.ac.uk

    Personal Secretary: Mrs Deborah Passey (works Tues and Thurs 9.30am-12noon)
    Tel: +44 (0)1223 762048
    Email: dp568@medschl.cam.ac.uk

    From: claire Francis claire.francis1492@gmail.com
    Sent: 22 October 2019 00:05
    To: Francis.Collins@nih.hhs.gov
    Cc: Linda Gough; Roger Davis; ptontonoz@mednet.ucla.edu; Fiona Watt – UKRI MRC; Frances Rawle – UKRI MRC; Fiona Godlee; michael.way@crick.ac.uk; karen.vousden@crick.ac.uk; Margaret Ashcroft
    Subject: Highly problematic NIH-funded data Mol Cell Biol. 1999 Mar;19(3):1751-8. Precedence for retracting old paper from Mol Cell Biol.

    Highly problematic NIH-funded data Mol Cell Biol. 1999 Mar;19(3):1751-8. Precedence for retracting old paper from Mol Cell Biol.

    Mol Cell Biol. 1999 Mar;19(3):1751-8.
    Regulation of p53 function and stability by phosphorylation.
    Ashcroft M1, Kubbutat MH, Vousden KH.
    Author information
    1
    ABL Basic Research Program, NCI-FCRDC, Frederick, Maryland, USA.

    This work was sponsored by National Cancer Institute, DHHS, under contract with ABL. https://pubpeer.com/publications/B518680DD43B568C9DA7F41F9BBE54

    Problematic data:-

    Figure 5A.
    https://pubpeer.com/publications/B518680DD43B568C9DA7F41F9BBE54#1

    Figures 7A and 7C.

    Figure 7B.

    Like

  12. “CRUK Chief Scientist Karen Vousden never replied to the cries for help posted as comments under my article, but as I demonstrate below, she has good reasons to be disinterested in this affair.”

    https://www.nature.com/articles/d41586-019-03529-w

    “Other organizations have decided to do publication checks internally. After the Beatson Institute in Glasgow, UK, had to deal with a retraction in 2012, it hired a dedicated integrity offer, former molecular biologist Catherine Winchester, to check all papers destined for publication by eye. “It took only a short time for the more junior scientists to shed their fear that they were being policed, but there was immediate buy-in from senior PIs,” she says. “Now everyone is really grateful for the service.””

    https://www.crick.ac.uk/research/find-a-researcher/karen-vousden

    “In 2002 she returned to the UK to become the Director of the CRUK Beatson Institute in Glasgow, moving back to London in 2016 to take up the role of Chief Scientist at CRUK and Group Leader at the Francis Crick Institute.”

    ” [Beatson] hired a dedicated integrity offer, former molecular biologist Catherine Winchester, to check all papers destined for publication by eye”.

    “destined for publication” is a convenient formula so that Karen Vousden’s publication were not subjected to scrutiny.

    The British are really quite clever that way.

    Like

  13. How much did CRUK pay management consultants to come up with that name, or was it their own idea?

    Like

  14. Dear Leonid,

    Very interesting article, thank you. I agree with nearly all of it, including of course any image splicing, duplications, flipping, cloning etc. However, there is one important exception:

    “Loading control is from a different gel, a very bad practice. And yet, nobody cared, in 2019.”

    This is not correct, in the vast majority of cases it is inappropriate to perform a loading control on the same membrane as your protein of interest. This is because they are expressed at different levels in cells by several orders of magnitude. At the level where you are able to detect your protein of interest, you more often that not be way outside of the linear range for the typical loading controls you demand. There is a lot of evidence to demonstrate this and that what you and others (yes including Nature Research, though curiously and thankfully rightly, they do not enforce it) are ruling, is actually a worse practice:

    Like

    • It is a strange argument. Like saying: I will not buy myself a watch because cheaper watches are not precise enough for me. Instead, I will ask a man with a Rolex and trust him to tell me the right time of the day.

      Like

      • Was that an evidence based argument?

        Please read and consider the following carefully. Let’s return to the science and make the evidence (nicely explained here https://pubpeer.com/publications/2D084E91EDC85D6C23BC63ACF5E6A8 , PMIDs: 25540176; 24738055; 25852189; 30800670; 25059473; 23709336; 24023619; 18571732; 21186791; 23454168; 24561642) clear. It is simple:

        Protein of interest: I load 20 ug of protein in Lane 1 and get a signal of 0.5, and load 40 ug of protein in Lane 2 and get a signal of 1. This is good, nice and in the linear range. Typical for many proteins of interest.

        Beta-actin: I load 20 ug of protein in Lane 1 and get a beta-actin signal of 5, and load 40 ug of protein in Lane 2 and get a signal of 7.5. This is clearly non-linear. When loading greater than 1-5 ug of protein for typical loading controls beta-actin, GAPDH, etc these are ALWAYS non-linear (PMIDs: 25540176; 24738055; 25852189; 30800670; 25059473; 23709336; 24023619; 18571732; 21186791; 23454168; 24561642). They are too highly expressed relative to a typical protein of interest.

        What happens if we use this loading control as a reference?

        Well, Lane 1: 0.5/5 = 0.1, Lane 2: 1/7.5 = 0.133. So Lane 1: Lane 2 = 0.1 : 0.133 i.e. the normalization isn’t working, and is distorting the data, actually making it worse!

        Clearly not good. If our loading control was linear, and they should always be close to linearity to avoid being detrimental, then we would have got the desired value of 0.5/5 : 1/10 = 0.1 : 0.1 i.e. 1 : 1.

        So what can be done if you want to use beta-actin but still detect our protein of interest? Clearly we need to load less protein to get back in to the linear range for beta-actin, and many studies have shown this needs to 1-2 ug, 5 ug at a push. The same applies for many other commonly used housekeepers. But at these levels, how many proteins of interest are you going to detect? Not so many.

        So this necessitates that these western blots for protein of interest and beta-actin are performed on different gels with different levels of protein, if you want your loading control to be useful – you do, right? You CANNOT always perform all your western blots for the proteins you want to probe for on the same membrane for these reasons! Please stop pushing this idea, it is wrong.

        There are of course other appropriate ways to do loading and transfer control (e.g. good linear total total protein stains), but your criticism of “loading control libraries” and demand for “loading controls on every membrane” is clearly fallacious.

        Get it? Like I said, easy.

        Like

      • Are you a Western Blot Truther, Tom?
        Get it? Like I said, easy.

        Like

  15. How do read the above and the 11 references cited, which have come to the opposite conclusion to the non-evidenced based one you preach, and continue to write that controls like actin, GAPDH etc must be performed on every membrane?

    Like

    • 11 references as opposed to thousands of papers saying otherwise? Discussion thread closed here, Tom. Please continue on PubPeer. Try my own papers!

      Like

    • One way to potentially get around these issues is to use a LiCor (or fluorescent imaging) so that you can quantify protein of interest and loading control on same blot.

      Alternatively do mass-spectrometry 🙂

      Here is a review on quantifying images on immunoblots here http://stke.sciencemag.org/content/8/371/rs2.

      Frankly there is also a strong argument for using multi-loading controls.

      Like

      • Dear Dr. Rune Linding,

        Thanks for your comment. Indeed, the Science Signaling article you cite is one of the 11 western blot methodology papers I have quoted here and is excellent. I would urge you to review this further and the other papers I have cited. While you are right fluorescent secondaries can have a broader linear range, these papers show this issue of saturation is also a problem with fluorescent secondaries. As these describe, a major culprit is saturation when transferring. If you load > 5-10 ug, transfer of abundant proteins such as actin and GAPDH often reaches maximum capacity on the membrane (even with higher capacity PVDF) and so does not properly correlate to the amount that was actually in the gel. Differences in loading between lanes are still underestimated. Hence why this is a problem for all detection methods (but is minimized using total protein stains as controls for loading and transfer, as discussed), and why we cannot perform all our western blots on one membrane with the same protein loading if we want them all to be meaningful and not misleading. One size does not fit all!

        In fact the Janes et al paper you link, Figures 4, 5 and 9 nicely show, in their words, ‘Quantifying partially saturated immunoblots can markedly underestimate differences between samples’. These are not trivial issues, which completely invalidate Leonid’s arguments about ‘loading control libraries’.

        But unfortunately Leonid won’t engage when people show him the evidence, despite this being one of his favorite things to criticize in papers. Instead he tells us there are ‘thousands of papers’ to support what he claims (I’ve searched hard and read all the western blot methodology papers I can find), which is certainly a gross alternative fact. I’m surprised he doesn’t want to defend his accusations regarding tens of thousands of westerns blots in life sciences papers, or at least, embrace the evidence like a scientist and climb down from this position. He directs me to his own papers, when, well, they tell us nothing regarding the issues raised.

        Like

  16. Zebedee

    J Biol Chem. 2001 Sep 7;276(36):33861-8. Epub 2001 Jul 11.Cell transformation by the E5/E8 protein of bovine papillomavirus type 4. p27(Kip1), Elevated through increased protein synthesis is sequestered by cyclin D1-CDK4 complexes.O’Brien V1, Grindlay GJ, Campo MS.

    Author information

    1Beatson Institute for Cancer Research, CRC Beatson Laboratories, Garscube Estate, Glasgow G61 1BD, Scotland, United Kingdom.

    Figure 1. Much more similar than expected.

    Like

  17. Zebedee

    Virology. 2008 Aug 1;377(2):408-18. doi: 10.1016/j.virol.2008.04.036 2 comments on PubPeer (by: Cynodon Maritimus) . Epub 2008 Jun 2.The E6E7 oncoproteins of cutaneous human papillomavirus type 38 interfere with the interferon pathway.Cordano P1, Gillan V, Bratlie S, Bouvard V, Banks L, Tommasino M, Campo MS.

    Author information

    1The Institute of Comparative Medicine, University of Glasgow, Glasgow G61 1QH, UK.

    Figure 1A.

    Figure S2.

    Cross-over event:
    https://forbetterscience.com/2018/10/11/who-cures-cancer-in-photoshop/

    Like

  18. Well done Leonid. Marais today announced his resignation as director of CRUK MI. This follows on shortly from the recent disclosure that Caroline Springer’s funding will not be renewed (supposedly to be appealed). I guess with a projected shortfall of £150m at CRUK, the damage to trust created by the likes of Marais, Springer and their peers mean they’re not too big to fall afterall. Or perhaps it’s all just a string of co-incidences. They’ll still leave with their huge pensions and accolades intact (if not their reputations) mind, which is a shame. How about justice for Girotti. Her career has been destroyed because of this man and yet where finally is the evidence of her misconduct. CRUK: it’s not too late to do the right thing and investigate the multiple allegations of bullying that have come to the surface on this excellent forum. UoM never washes its dirty laundry in public, prefers gagging orders.

    Like

  19. Petro Fide

    If true, this is fantastic news for those who have suffered at the hands of Marais and Springer. Although I have considerable sympathy for the people in their labs who will find themselves out of work soon. This is some kind of justice, although not necessarily for GIrotti. It’s disappointing that UoM or CRUK don’t take this opportunity to make an example of the pair like the Wellcome trust did with Nazneen Rahmanhttps://www.theguardian.com/science/2018/aug/17/top-cancer-scientist-has-35m-in-grants-revoked-after-bullying-claims
    After this incident, Wellcome conducted a survey on bullying. The culture hopefully will change from the machismo-fuelled one it is today where rock star scientists strut the stage puffed up on concocted studies whipped out of their lab. This culture was created by CRUK and Wellcome. Time to undo it. Worldwide cancer, Yorkshire Cancer and Northwest Cancer do it differently. Support them.https://yorkshirecancerresearch.org.ukhttps://www.nwcr.orghttps://www.worldwidecancerresearch.org

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